Bergeron B. Bioinformatics Computing
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Bibliography
Chapter One—The Central Dogma
Chapter Two—Databases
Chapter Three—Networks
Chapter Four—Search Engines
Chapter Five—Data Visualization
Chapter Six—Statistics
Chapter Seven—Data Mining
Chapter Eight—Pattern Matching
Chapter Nine—Modeling and Simulation
Chapter Ten—Collaboration
Chapter One—The Central Dogma
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Chapter Two—Databases
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Chapter Three—Networks
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Chapter Four—Search Engines
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Mack, R., Y. Ravin and R. Byrd. "Knowledge Portals and the Emerging Digital Knowledge Workplace."
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Simon, S. XML. New York: McGraw-Hill, 2001.
Van Ginneken, A. "The Structure of Data in Medical Records." Yearbook of Medical Informatics (J. van
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Chapter Five—Data Visualization
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Baxevanis, A. and B. Ouellette. Bioinformatics: A Practical Guide to the Analysis of Genes and
Proteins. New York: John Wiley & Sons, 2001.
Gibas, C. and P. Jambeck. Developing Bioinformatics Computer Skills. Sebastopol, CA: O'Reilly &
Associates, 2001.
Jagota, A. Data Analysis and Classification for Bioinformatics. Santa Cruz, CA: Arun Jagota, 2000.
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2001.
Chapter Six—Statistics
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Stanford University, Stanford Center for Professional Development, 2002.
Ewens, E. and G. Grant. Statistical Methods in Bioinformatics. New York: Springer-Verlag, 2001.
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Jagota, A. Data Analysis and Classification for Bioinformatics. Santa Cruz, CA: Arun Jagota, 2000.
Kanehisa, M. Post-Genome Informatics. Oxford: Oxford University Press, 2001.
Pevzner, P. Computational Molecular Biology. Cambridge, MA: MIT Press, 2001.
Schnena, M., Ed. Microarray Biochip Technology. Natick, MA: Eaton Publishing, 2000.
Shortliffe, E., L. Perreault, G. Wiederhold and L. Fagan, Eds. Medical Informatics: Computer
Applications in Health Care and Biomedicine. New York: Springer, 2001.
Chapter Seven—Data Mining
Arledge, E. and J. Cort. Cracking the Code of Life. Boston, MA: WGBH Boston Video, 2001.
Baxevanis, A. and B. Ouellette. Bioinformatics: A Practical Guide to the Analysis of Genes and
Proteins. New York: John Wiley & Sons, 2001.
Deschaine, L., J. McCormack, D. Pyle and F. Francone. "Genetic Algorithms and Intelligent Agents
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15(3)(2001): 35–40.
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Natural Language Processor in the Clinical Environment." Nineteenth Annual Symposium on
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Jagota, A. Data Analysis and Classification for Bioinformatics. Santa Cruz, CA: Arun Jagota, 2000.
Kanehisa, M. Post-Genome Informatics. Oxford: Oxford University Press, 2001.
Nasukawa, T. and T. Nagano. "Text Analysis and Knowledge Mining System," IBM Systems Journal
40(4)(2001): 814–30.
Pyle, D. Data Preparation for Data Mining. San Francisco, CA: Morgan Kaufmann Publishers, 1999.
Rubin, D. "Natural Language Processing," Bioinformatics Methods and Techniques. Stanford
University, Stanford Center for Professional Development, 2002.
Tisdal, J. Beginning PERL for Bioinformatics. Sebastopol, CA: O'Reilly & Associates, Inc., 2001.
Chapter Eight—Pattern Matching
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Brutlag, D. "Multiple Sequence Alignment and Motifs." Bioinformatics Methods and Techniques.
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Cheng, B. "Protein Structure Analysis." Bioinformatics Methods and Techniques. Stanford University,
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Kanehisa, M. Post-Genome Informatics. Oxford: Oxford University Press, 2001.
Mount, D. Bioinformatics Sequence and Genome Analysis. Cold Spring Harbor, NY: Cold Spring
Harbor Laboratory Press, 2001.
Pevzner, P. Computational Molecular Biology. Cambridge, MA: MIT Press, 2001.
Ralston, A., E. Reily and D. Hemmendinger, Eds. Encyclopedia of Computer Science. New York:
Groves Dictionaries, Inc., 2000.
Schuler, G. "Sequence Alignment and Database Searching." Meth Biochem Anal 39(1998): 145–71.
Thompson, J., F. Plewniak and O. Poch. "A Comprehensive Comparison of Multiple Sequence
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