
In this case, the ‘reagent’ gas acts as a moderator,
slowing the electrons to the thermal energies where
the electron capture process become efficient. ECNCI
is particularly useful for determining analytes with
strong electron capturing properties, for example,
halogenated molecules such as dioxins. ECNCI can
yield much greater sensitivities and lower detection
limits in these cases.
0012 Positive and negative reagent ions may also react in
other ways. A range of gases are available for specific
applications. CI spectra usually contain intense pro-
tonated or negatively charged molecules and fewer
fragment ions than EI.
0013 Desorption EI and CI In conventional EI and CI,
analyte molecules are typically introduced into the
ion source via a heated probe or GC inlet. Desorp-
tion EI and desorption CI provide techniques for
obtaining mass spectra of less volatile, thermally
labile molecules by rapid heating whilst the samples
are very close to the electron beam or are immersed in
the CI plasma. These techniques are still used occa-
sionally but have largely been superseded by more
robust and efficient methods for analyzing involatile
molecules, as described below.
0014 Fast atom bombardment (FAB) and liquid secondary
ionization mass spectrometry FAB and liquid
secondary ionization mass spectrometry essentially
describe the same technique, and the terms can be
used interchangeably. FAB was the first ionization
technique to enjoy widespread success in analyzing
polar, labile, and large molecules, including peptides
and polysaccharides. The analyte in a viscous, low-
boiling liquid matrix, typically glycerol that is bom-
barded with a stream of atoms or ions, typically Xe
atoms or Cs
þ
ions that have average translational
energies in the keV range. Abundant protonated
or cationized molecules, for example [M þH]
þ
or
[M þNa]
þ
and deprotonated ions, [M H]
, are
formed and detected in positive and negative
ion modes, respectively. Characteristic fragment ions
may also be formed.
0015 FAB enjoyed great and deserved popularity in the
1980s and helped to establish mass spectrometry very
strongly in the biological sciences. However, it has
generally been superseded by the more powerful, ver-
satile techniques of electrospray and matrix-assisted
laser desorption ionization.
0016 Electrospray ionization (ESI) and atmospheric pres-
sure chemical ionization (APCI) In ESI, the analyte
is dissolved in a suitable solvent, for example a 50:50
mixture of acetonitrile and water, and is pumped
through a narrow diameter stainless steel capillary
tube that is maintained at a voltage in the range of 1–
4 kV. This process generates a plume of charged liquid
droplets in atmosphere (the Taylor cone). A heated
(usually nitrogen) gas aids evaporation of the charged
droplets and helps break up clusters of analyte and
solvent ions. Analyte ions are generated from the
charged droplets by an evaporation mechanism. The
ions are conducted into the mass spectrometer vacuum
via a pumped nozzle-skimmer system (Figure 2).
0017A curtain of nitrogen gas, which also aids evapor-
ation of the charged droplets, prevents cluster ion
formation. The ions are sampled through an orifice
and enter the mass analyzer. ESI has revolutionized
mass spectrometry by enabling mass spectra to be
obtained routinely on polar, involatile molecules.
Even high-molecular-weight biomolecules can be
analyzed by ESI. Proteins, for example, yield a series
of multiply charged ions well within the mass range of
conventional mass spectrometers such as quadrupoles
or magnetic sector instruments. These signals can be
transformed mathematically to yield the molecular
weight of the sample (Figure 3).
0018APCI is closely related to ESI and often employs an
almost identical ion source. The only changes are the
addition of a discharge electrode and replacement of
the ESI spray probe with an APCI probe. In APCI,
flowing liquid, typically an HPLC eluent, that con-
tains the dissolved analyte(s) is conducted to a pneu-
matic nebulizer, where it forms a spray. As with ESI,
the spray is generated in atmosphere and is directed
towards a discharge electrode that is maintained at
1–4 kV. This is placed close to a small-diameter orifice
that leads to the high-vacuum mass analyzer region. A
pumped nozzle and skimmer arrangement removes
excess solvent molecules, and desolvated ions are
admitted to the mass analyzer, in a similar manner
to an ESI source. Reagent ions are generated from
solvent molecules in the electrical discharge near the
corona pin. These react with analyte molecules to
generate protonated or deprotonated molecules
([M þH]
þ
or [MH]
), in a similar manner to con-
ventional CI.
0019APCI is more robust (being less prone to solvent or
solvent modifier effects) than ESI but is usually too
vigorous and energetic to yield useful data on fragile
biomolecules. However, it is very useful for determin-
ing molecules of low to intermediate polarity and is
capable of producing useful data on some quite polar
molecules, for example monoglycosides.
0020Matrix-assisted laser desorption Ionization
(MALDI) MALDI is one of the best techniques for
obtaining analytical data, including molecular
weight information, on medium and large biomole-
cules. The sample, in low concentration, is mixed
MASS SPECTROMETRY/Principles and Instrumentation 3741