106 Part II: Water, Enzymology, Biotechnology, and Protein Cross-linking
The lone pairs are also the negative sites of the
molecule, whereas the bonded H atoms are the posi-
tive sites. The discovery of protons and electrons
led to the idea of charge distribution in molecules.
Physicists and chemists call NH
3
and H
2
O polar
molecules because their centers of positive and neg-
ative charge do not coincide. The polarizations in
nitrogen and oxygen compounds contribute to their
important roles in biochemistry and food chemistry.
Elements C, N, and O play important and comple-
mentary roles in the formation of life.
Electronegativity is the ability of an atom to
attract bonding electrons towards itself, and elec-
tronegativity increases in the order of H, C, N, and O
(Pauling 1960). Chemical bonds between two atoms
with different electronegativity are polar because
electrons are drawn towards the more electronegative
atoms. Thus, the polarity of the bonds increases in
the order of H–C, H–N, and H–O, with the H atoms
as the positive ends. The directions of the bonds must
also be taken into account when the polarity of a
whole molecule is considered. For example, the four
slightly polar H–C bonds point toward the corner of a
regular tetrahedron, and the polarities of the bonds
cancel one another. The symmetric CH
4
molecules
do not have a net dipole moment, and CH
4
is nonpo-
lar. However, the asymmetric NH
3
and H
2
O mole-
cules are polar. Furthermore, the lone electron pairs
make the NH
3
and H
2
O molecules even more polar.
The lone pairs also make the H–N–H, and H–O–H
angles smaller than the 109.5° of methane. The
chemical bonds become progressively shorter from
CH
4
to H
2
O as well. These distortions cause the
dipole moments of NH
3
and H
2
O to be 4.903 10
-30
Cm ( 1.470 D) and 6.187 10
-30
Cm ( 1.855 D),
respectively. The tendency for water molecules to
attract the positive sites of other molecules is higher
than that of the ammonia molecule, because water is
the most polar of the two.
Bond lengths and angles are based on their equilib-
rium positions, and their values change as water mol-
ecules undergo vibration and rotation or when they
interact with each other or with molecules of other
compounds. Thus, the bond lengths, bond angles, and
dipole moments change slightly from the values giv-
en above. Temperature, pressure, and the presence of
electric and magnetic fields also affect these values.
Using atomic orbitals, valence bond theory, and
molecular orbital theory, quantum mechanics has
given beautiful explanations regarding the shapes,
distortions, and properties of these molecules. Phi-
losophers and theoreticians have devoted their lives
to providing a comprehensive and artistic view of
the water molecules.
WATER VAPOR CHEMISTRY AND
SPECTROSCOPY
Spectroscopy is the study of the absorption, emis-
sion, or interaction of electromagnetic radiation by
molecules in solid, liquid, and gaseous phases. The
spectroscopic studies of vapor, in which the H
2
O
molecules are far apart from each other, reveal a
wealth of information about individual H
2
O mole-
cules.
Electromagnetic radiation (light) is the trans-
mission of energy through space via no medium by
the oscillation of mutually perpendicular electric
and magnetic fields. The oscillating electromagnet-
ic waves move in a direction perpendicular to both
fields at the speed of light (c 2.997925 10
8
m/s). Max Planck (1858–1947) thought the waves
also have particle-like properties except that they
have no mass. He further called the light particles
photons, meaning bundles of light energy. He
assumed the photon’s energy, E, to be proportional
to its frequency. The proportional constant h (
6.62618 10
-34
J/s), now called the Planck con-
stant in his honor, is universal. The validity of this
assumption was shown by Albert Einstein’s photo-
electric-effect experiment.
Max Planck theorized that a bundle of energy
converts into a light wave. His theory implies that
small systems can be only at certain energy states
called energy levels. Due to quantization, they can
gain or lose only specific amounts of energy. Spec-
troscopy is based on these theories. Water molecules
have quantized energy levels for their rotation, vi-
bration, and electronic transitions. Transitions be-
tween energy levels result in the emission or absorp-
tion of photons.
The electromagnetic spectrum has been divided
into several regions. From low energy to high ener-
gy, these regions are long radio wave, short radio
wave, microwave, infrared (IR), visible, ultraviolet
(UV), X rays, and gamma rays. Visible light of vari-
ous colors is actually a very narrow region within
the spectrum. On the other hand, IR and UV regions
are very large, and both are often further divided
into near and far, or A and B, regions.