enzyme kinetics, inhibition, 111
equilibrium, 7, 15, 43
equilibrium two sites, 50
equilibrium, coupled, 8, 54
equilibrium, intrinsic constants, 10
exit, 40
exponential decay, 25
F
facilitated dissociation, 84
filename, 45
fitting, 119, 127
fixed point notation, 138
for statement, 46
formatted output, 138
fsolve, 43, 44, 46
function, 44
function linreg, 105
G
global, 44
global fit, 124, 125, 136
gnuplot, 140, 143
H
half life, 25
half‐logarithmic plot, 26
Hill coefficient, 23, 70, 95, 117
I
if statement, 132
implicit conversion, 47
inflection point, 117
inhibition, reversible, 111
inhibitor, 52
initial velocity, 98, 102, 109, 131
initial velocity, association kinetics, 27
installation, 31
irreversible inhibition, 91
J
jpg, 48
K
kinetics, association, 75
kinetics, competitive binding, 81
kinetics, conformational change, 77
kinetics, dissociation, 74
kinetics, obstructed dissociation, 87
kinetics, ordered binding, 86
L
lag‐phase, 79
leasqr, 120, 121
least squares, 119
legend, 48
limit, 131
line, 106
Lineweaver‐Burk plot, 21, 22, 106, 110, 111
linreg, 105, 110, 121
linspace, 35, 45
Linux, 144
literature, 40
load, 126, 129
logarithmic scale, 129
logistic function, 24, 94
logspace, 103
lsode, 71, 74, 98
lsqcurvefit, 119, 120
M
Mac OS X, 143
MATLAB, 40, 72, 132
matrices, 38
matrix to vector, 135
max(), 57, 105, 106
Michaelis constant, 21
Michaelis‐Menten, 21, 97, 101, 102
minimum field width, 138
mkdir, 40
Multi‐parameter fits, 119
multiple exponential fit, 28
MWC model, 57, 60
N
nested loop, 55
nlinfit, 31
noncompetitive, 114
Notepadþþ,32
num2str, 100
numerical artifact, 117
numerical solutions, 12, 50
O
Octave, 31, 40
Octave version 3.2.4, 47, 48
ode23s, 71, 98
ode45, 71, 72, 98
148 Index