
and cytochrome c oxidase are also called Complex I, II, III, and IV, respectively. Succinate-Q reductase (Complex II), in
contrast with the other complexes, does not pump protons.
Coenzyme Q is a quinone derivative with a long isoprenoid tail. The number of five-carbon isoprene units in coenzyme
Q depends on the species. The most common form in mammals contains 10 isoprene units (coenzyme Q
10
). For
simplicity, the subscript will be omitted from this abbreviation because all varieties function in an identical manner.
Quinones can exist in three oxidation states (Figure 18.10). In the fully oxidized state (Q), coenzyme Q has two keto
groups. The addition of one electron and one proton results in the semiquinone form (QH·). The semiquinone form is
relatively easily deprotonated to form a semiquinone radical anion (Q·
-
). The addition of a second electron and proton
generates ubiquinol (QH
2
), the fully reduced form of coenzyme Q, which holds its protons more tightly. Thus, for
quinones, electron-transfer reactions are coupled to proton binding and release, a property that is key to transmembrane
proton transport.
18.3.1. The High-Potential Electrons of NADH Enter the Respiratory Chain at NADH-
Q Oxidoreductase
The electrons of NADH enter the chain at NADH-Q oxidoreductase (also called NADH dehydrogenase), an enormous
enzyme (880 kd) consisting of at least 34 polypeptide chains. The construction of this proton pump, like that of the other
two in the respiratory chain, is a cooperative effort of genes residing in both the mitochondria and the nucleus. The
structure of this enzyme has been determined only at moderate resolution (Figure 18.11). NADH-Q oxidoreductase is L-
shaped, with a horizontal arm lying in the membrane and a vertical arm that projects into the matrix. Although a detailed
understanding of the mechanism is likely to require higher-resolution structural information, some aspects of the
mechanism have been established.
The reaction catalyzed by this enzyme appears to be
The initial step is the binding of NADH and the transfer of its two high-potential electrons to the flavin mononucleotide
(FMN) prosthetic group of this complex to give the reduced form, FMNH
2
. Like quinones, flavins bind protons when
they are reduced. FMN can also accept one electron instead of two (or FMNH
2
can donate one electron) by forming a
semiquinone radical intermediate (Figure 18.12). The electron acceptor of FMN, the isoalloxazine ring, is identical with
that of FAD. Electrons are then transferred from FMNH
2
to a series of iron-sulfur clusters, the second type of prosthetic
group in NADH-Q oxidoreductase.
Fe-S clusters in iron-sulfur proteins (also called nonheme iron proteins) play a critical role in a wide range of reduction
reactions in biological systems. Several types of Fe-S clusters are known (Figure 18.13). In the simplest kind, a single
iron ion is tetrahedrally coordinated to the sulfhydryl groups of four cysteine residues of the protein. A second kind,
denoted by 2Fe-2S, contains two iron ions and two inorganic sulfides. Such clusters are usually coordinated by four
cysteine residues, although exceptions exist, as we shall see when we consider Q-cytochrome c oxidoreductase. A third
type, designated 4Fe-4S, contains four iron ions, four inorganic sulfides, and four cysteine residues. We encountered a
variation of this type of cluster in aconitase in Section 17.1.4. NADH-Q oxidoreductase contains both 2Fe-2S and 4Fe-
4S clusters. Iron ions in these Fe-S complexes cycle between Fe
2+
(reduced) or Fe
3+
(oxidized) states. Unlike quinones
and flavins, iron-sulfur clusters generally undergo oxidation-reduction reactions without releasing or binding protons.
Electrons in the iron-sulfur clusters of NADH-Q oxidoreductase are shuttled to coenzyme Q. The flow of two electrons
from NADH to coenzyme Q through NADH-Q oxidoreductase leads to the pumping of four hydrogen ions out of the
matrix of the mitochondrion. The details of this process remain the subject of active investigation. However, the coupled
electron- proton transfer reactions of Q are crucial. NADH binds to a site on the vertical arm and transfers its electrons to
FMN. These electrons flow within the vertical unit to three 4Fe-4S centers and then to a bound Q. The reduction of Q to