
20.7 A Molecule with a Fluxional Structure 1063
meso compound. The key to Doering and Roth’s experiment is that the chair
and boat arrangements give different products for both the meso and chiral
forms.
The results showed that it is the chairlike form that is favored,and that it is pre-
ferred to the boatlike arrangement by at least 6 kcal/mol. Presumably, some of the
factors that make chair cyclohexane more stable than the boat form (p. 198) oper-
ate to stabilize the related chairlike transition state.
There are many things that are important about this work. First of all, it is a
prototypal example of the way labeling experiments can be used to dig out the
details of a reaction mechanism.The second reason is more subtle,but perhaps more
important. As we will see in Section 20.7, the study of the Cope rearrangement
leads directly to an extraordinarily intellectually creative idea.
CHORISMATE TO PREPHENATE: A BIOLOGICAL COPE
REARRANGEMENT
The Cope rearrangement is by no means restricted to the
laboratory. Nature uses Cope-like processes as well. For
example, in bacteria and plants a critical step in the
production of the essential amino acids tyrosine and
phenylalanine is the rearrangement of chorismate to
prephenate, catalyzed by the enzyme chorismate mutase.
At the heart of this rearrangement is a Cope-like process
called the Claisen
5
rearrangement. The research groups of
Jeremy Knowles (1935–2008) at Harvard and Glenn
Berchtold (1932–2008) at MIT collaborated on a tritium
(
3
H T, a radioactive isotope of hydrogen) labeling exper-
iment, related to that used by Doering and Roth, to deter-
mine that the enzymatic reaction also proceeds through a
chairlike transition state. Notice that the chairlike transi-
tion state must take the compound with a (Z) double bond
to a product in which the stereogenic carbon is (S), not
(R). The conversion of chorismate into prephenate is a
Cope-like rearrangement. The chair transition state is
shown in the top reaction and a boat transition state is
shown in the bottom reaction.
(Z ) Double bond
This carbon is (S)
This carbon would be (R )
OH
O
T
H
T
H
–
OOC
COO
–
chorismate
mutase
Chorismate
Chairlike transition
state for chorismate
Prephenate
OH
–
OOC
COO
–
O
(Z ) Double bond
OH
O
T
H
T
H
COO
–
COO
–
...the tritium-labeled
carbon would be (R)
lf this boatlike transition
state were used…
OH
–
OOC
COO
–
COO
–
O
20.7 A Molecule with a Fluxional Structure
We spent some time in Section 20.6 working out the details of the structure of the
transition state for the Cope rearrangement. This rearrangement is a most general
reaction of 1,5-hexadienes, and appears in almost every molecule incorporating the
1,5-diene substructure.In this section we will examine the consequences of the Cope
rearrangement and will work toward a molecule whose structure differs in a funda-
mental way from anything you have seen so far in this book. At room temperature
it has no fixed structure; instead it has a fluxional structure,in which nearest neigh-
bors are constantly changing. Along the way to this molecule there is some extraor-
dinary chemistry and some beautiful insights. This section shows not only clever
ideas and beautiful chemistry, but also how much fun this subject can be.
5
The same Claisen of the Claisen condensation (p. 987) and the Claisen–Schmidt reaction (p. 984).
Cope rearrangement