453
Subject Index
– partitioning methods 311
– self-organizing maps (SOMs) 314
– sequential K-means 316
– single linkage 311
clustering-based classification 326
CML see Chemical Markup Language
codon 48, 50
codon recognition 277
coefficients of MCA 175ff.
– control coefficients 176
– elasticity coefficients 176
– local coefficients 176
– response coefficients 176
coexistence 345
colony 115
column chromatography 123
– affinity chromatography 124
– gel filtration chromatography 123
– hydrophobic interaction chromatography
123
– ion exchange chromatography 123
comparative sequence analysis 265
compartment 37ff., 158, 168, 349
competition 345
competitive inhibition 150
complementary base pairing 339, 345
composite regulatory element 262
concentration 140
concentration vector 159f., 166
concentration-control coefficient 179
condensation 26
conditional dependency 79 ff.
conditional probability 102
conditional probability distribution 270
connectivity 269
connectivity theorems 183
consensus sequence 51
conservation relations 165, 186f., 210, 214
conserved non-coding sequences 265
constant organization 340
constants 7
constraint 164, 356
contingency table 377
control 174
control coefficients 176, 178f.
– as functions of time and space 194
– characteristic times 192
– generalized state variables 191
– matrix expressions 185
– molar free energy differences 192
– spatial heterogeneity 194
– spatial homogeneity 194
– time-dependent 193
convergence 85
convex function 82
Coomassie blue 118
cooperation 345
cooperativity 154
– complete 155
– heterotropic 154
– homotropic 154
– negative 154
– positive 154
core promoter 258
co-regulated 307
correlation 378
– of samples 89
cosmids 115
cost function 356
coupled oscillator 230
covalent bond 23 ff.
covariance 82 ff.
covariance matrix 82
CpG islands 265
CPN Tools 435
cristae 42
cross-links 240
crossover 55f.
cross-validation 327, 329
– holdout method 327
– k-fold cross-validation 327
– Leave-one-out cross-validation 327
CRP see cAMP receptor protein
cumulative distribution function 81
cyclin 234, 236
cyclin-dependent kinase inhibitor 234
cyclin-dependent kinases 234
cysteine 32
cytoplasm 37
cytosine 35f.
cytoskeletal framework 41 f.
cytosol 37, 41f., 50
d
DAG see directed acyclic graph
Darwin 337
data integration 11ff., 367ff.
– semantic data integration 369
data marts 369
data model 369
– object-oriented model 369
– relational data model 369
data transformation 309
data warehouse 369
data-base federation system 369
database network 368, 370
databases 399 ff.
– alternative splicing sites (ASD) 407