461
Subject Index
– normal distribution 83
– product measure 84
probability space 78
probability theory 78 ff.
processing of mRNA 47 f.
product inhibition 247
product space 84
projection 98
prokaryotes 20ff., 278
proline 31
prometaphase 54
ProML 442
promoter 47, 51f., 260ff., 283
– core promoter 260
– distal promoter module 261
– downstream promoter element (DPE)
261
– initiator region (INR) 261
– INR see initiator region
– null promoter 261
– proximate promoter module 261
– TATA box 52, 260f.
– TRANSCompel 263
– transcription factor-binding site (TFBS)
260
– transcriptional start point 260
promoter activation 280
promoter databases 413
promoter identification 259ff.
promoter recognition 262
– FirstEF 264
– FunSiteP 264
– NNNP 264
– PromFind 264
– promoter recognition program 264
– PromoterInspector 264
– PromoterScan 264
– TSSG/TSSW 264
prophase 54
proposition logic 352
protein activity control 258
protein biosynthesis 49
protein chips 127
protein gels 117ff.
protein-protein interaction 128, 261
proteins 31ff.
protocells 346
PubMed 406
pulse field electrophoresis 112
purines 35f.
P-value 93ff.
PyBioS 426ff.
pyrimidines 35f.
pyruvate 42f.
q
qualitative models 243
quasi-equilibrium 145, 171
quasispecies 338 ff.
– master quasispecies distribution 343
quasispecies model 342ff.
quasi-steady state 145, 171, 285
quasi-steady-state approximation 281
quaternary structure 35
r
R statistical software package 298, 419
random experiment 78
random fluctuation 104
random network 271
random variable density 81f.
random vector 81
rank 64, 91
ras proteins 208
Rasmol 411
rate constant 141
rate equation 146f.
rate-limiting step 175
reaction path 143f.
reaction rate 140f., 147, 150
– net rate 141
reactive oxygen species (ROS) 245
Reactome 409f.
receptor 40, 202ff., 216
– PromFind 263
– PromoterInspector 263
receptor-ligand interactions 203
recognition sequences 110
redox potential 143
reduced stoichiometric matrix 167
reduction of ODE systems 166f., 171ff.
reference state 194, 357, 359
RefSeq 406
regulation 174
– of enzyme activity 149ff.
– of operons 278
regulator of G protein signaling (RGS) 207
regulatory network 101ff.
– Bayesian networks 102
– Boolean networks 101
– linear networks 101
relaxation time 169, 189
replication 339
– accuracy of replication 344
– complementary replication of RNA 345
– erroneous replication 342
– identical replication 340
– rate 346
reporter gene 128